PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061660
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 176aa    MW: 20643.3 Da    PI: 5.5211
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061660genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.53.2e-0951109462
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                           lk+ rr ++NR++A+rsR R+ ++i+eL++++k Le        ++e+ k++ +kl+ e
  PGSC0003DMP400061660  51 LKKFRRTISNRLSAQRSRMRRTEYIDELKKEAKDLEDTIAFVGRKIENEKDNKKKLQLE 109
                           8999*******************************987777777777777666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.101.7E-8566IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003388.4E-748119IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.96750113IPR004827Basic-leucine zipper domain
PfamPF001706.2E-950110IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-85297No hitNo description
PROSITE patternPS0003605570IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.1E-1067117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MNEKRSRSDE PNLSLSLKTP IEYESVKRIP TLEEAMNLEL KNGQVDSNVN LKKFRRTISN  60
RLSAQRSRMR RTEYIDELKK EAKDLEDTIA FVGRKIENEK DNKKKLQLEN QMLRVQLDSI  120
TNKSNLLTVQ TEELKVELKR LKEPAEAQED EEHMDMDQYL NFDNMNFSPP KNDNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2376694e-78AC237669.1 Solanum tuberosum BAC genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069614.21e-100basic leucine zipper 34-like
TrEMBLM1DJC41e-121M1DJC4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000899851e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76151929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.24e-06bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]