PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061686
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 156aa    MW: 17751.5 Da    PI: 9.5569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061686genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00124668123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C++C+k+F +   L  H  +H
  PGSC0003DMP400061686 46 YECKKCKKRFESFQALGGHATSH 68
                          99********9988887776666 PP
2zf-C2H213.30.0002690112123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cgk F     L  H+r+H
  PGSC0003DMP400061686  90 HECSICGKEFAIGQALGGHMRKH 112
                           78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-845112No hitNo description
PfamPF139121.7E-94569IPR007087Zinc finger, C2H2
PROSITE profilePS501579.644673IPR007087Zinc finger, C2H2
SMARTSM003550.234668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-683115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.9E-1190115IPR007087Zinc finger, C2H2
SMARTSM003550.06990112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82490117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MCTSSATMNM RLKKSKEEES VENFAMANCV DIAKRNELLG RRKLYYECKK CKKRFESFQA  60
LGGHATSHKN KLNMMMSTNG ESLHVNKKKH ECSICGKEFA IGQALGGHMR KHRDELNQIE  120
QNKKIKLEEN LIKSGELVES TKTSLNLDLN LSIWE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061686
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-136HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158881.11e-102PREDICTED: zinc finger protein ZAT11-like
TrEMBLM1DJE81e-108M1DJE8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000900111e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-24C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]