PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061778
Common NameLOC102606430
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20489.4 Da    PI: 7.5769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061778genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.72.3e-111663249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ie+k    ++fskR+ g++K  +EL +  d+++ +i+fs+tgk + +
  PGSC0003DMP400061778 16 KIESKKALFTSFSKRLGGLFKTTSELVTEFDVDIGIIVFSPTGKPHSF 63
                          69999999***********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.778767IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-14766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-18878IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-7929IPR002100Transcription factor, MADS-box
PfamPF003198.2E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-72944IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-74465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MENKKTKGRQ KIPMRKIESK KALFTSFSKR LGGLFKTTSE LVTEFDVDIG IIVFSPTGKP  60
HSFFHPTVDA VVSRFQNPDM QLSDDTHLAM VFAQNSVNQL KEKLEELDIK EKTEIARTNY  120
FDQLTKSRQK GWWESIEQLN EDEVSKFEAW LNVASFTMHY RLNQLIVSFS LGCESCGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061778
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349649.11e-131PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DJN01e-130M1DJN0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000901031e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-20AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]