PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061924
Common NameLOC102586953
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 672aa    MW: 73394.9 Da    PI: 8.1994
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061924genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1377.3e-12206255251
                           XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                           ++ kr  rk++NRe+A  sR+RKk ++eeLe+k+  L++  + L  +l+ 
  PGSC0003DMP400061924 206 EDEKRMARKIRNRESAHLSRKRKKHYVEELENKFRILQSTIQHLNTNLSY 255
                           67799*********************************999888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-10205269IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.783207267IPR004827Basic-leucine zipper domain
PfamPF001701.0E-9208265IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-10209267No hitNo description
Gene3DG3DSA:1.20.5.1704.0E-13209267No hitNo description
CDDcd147043.50E-14210260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MADPPPAEEA NFIGEFDGLA VQPLDRTFYA LHMTTTYQEN GEDFPMEFPK VNFTTDAIIL  60
DESFNDSFPN PTNDDAFQNP NCLPDCLGSE SGLDSSQMNP NSFGQPKSQL MGSSDDASRK  120
FNSTSGYCLG EAPVSNKLVH FPLNLGNNSV KGGVVEKKLK LEGVNANISN CSYLLKRKKS  180
SEDSNDVGKH QKSTIFSLYD NANNDEDEKR MARKIRNRES AHLSRKRKKH YVEELENKFR  240
ILQSTIQHLN TNLSYAMVEN VTLKAQLGGT SVHAQVPSPL GIYPYPPPWI SYTPSYMMSR  300
QRSQVPLVPI PKLKSQALPP APKSSKKVEK QKSEVKTKKV ASVSFLGVLF FMLLFGGLVP  360
LLKLRYGGIR EPSMSGESFV SGFYVKYHGR VLTVDGPVNG TGCSGKYGGK DHSSHCGRGG  420
QGESNQKNTN KAADEFAHVG NGSDPLAASM YVPRNDKLVD IDGNLIIQSV LASEKAMAFH  480
GSADKKNREA GLAVPGDLAP AIPGIHPRLY RSPAMGQNIL GSEEKENVKS TMQEWYLEGL  540
AGPLLSSGMC TEVFQFDTSS SARDISMEER QNGTRLHRNR RILNGPPISL SRPSHSSGEQ  600
TGTDGKRENF SRNKSLSSLV VSVLVDGDGD GIMGPKSVSR IFIVVLIDSV KYVTYSCMLP  660
FIDSVHVAEA S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228RKRKK
2569580RQNGTRLHRNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350426.10.0PREDICTED: bZIP transcription factor 17-like
TrEMBLM1DJZ60.0M1DJZ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000902490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30292450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.12e-81bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]