PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061939
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17130.5 Da    PI: 9.8313
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061939genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14.2e-221561349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            n+sn qvtfskRr g++KKA ELS+LC+a+v +++fs+++k y y
  PGSC0003DMP400061939 15 MPNQSNLQVTFSKRRDGVFKKATELSTLCGADVVIVVFSPSNKPYSY 61
                          569***************************************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-29564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.165565IPR002100Transcription factor, MADS-box
CDDcd002653.75E-32677No hitNo description
SuperFamilySSF554551.83E-26679IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-19727IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231661IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-192742IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-194263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MRRPNGRRRV EMTRMPNQSN LQVTFSKRRD GVFKKATELS TLCGADVVIV VFSPSNKPYS  60
YGHPSVESIM NRFLGGNPPT DTDAPNPIVI AHQNANTDEI NRKLNRLEIS LEREKKYGEA  120
LQASRKEPPI EKLSSFDLKN MCKALEAADE VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-17691186Myocyte-specific enhancer factor 2A
3kov_B2e-17691186Myocyte-specific enhancer factor 2A
3kov_I2e-17691186Myocyte-specific enhancer factor 2A
3kov_J2e-17691186Myocyte-specific enhancer factor 2A
3p57_A2e-17691186Myocyte-specific enhancer factor 2A
3p57_B2e-17691186Myocyte-specific enhancer factor 2A
3p57_C2e-17691186Myocyte-specific enhancer factor 2A
3p57_D2e-17691186Myocyte-specific enhancer factor 2A
3p57_I2e-17691186Myocyte-specific enhancer factor 2A
3p57_J2e-17691186Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061939
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430260.0AC243026.1 Solanum tuberosum chromosome 11 clone RH059C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362321.11e-101PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DK051e-109M1DK05_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000902641e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-35AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]