PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062169
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 209aa    MW: 24508.6 Da    PI: 6.3681
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062169genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.95e-16611025128
                   NAM  25 gkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy.WkatgkdkevlskkgelvglkktLvfykg 111
                           g ++e  + i+ +d+y   eP +L  + +++++  yfF++ ++k+ +gk+ nr+t  g  Wk   ++ke+l+k+++ +g kkt+ f ++
  PGSC0003DMP400062169   6 GMPIEY-HDIPYIDLYGNkEPAELF-QNSGNNHVNYFFTQLKRKTIKGKNFNRSTVGGSkWKGRDNSKEILDKERSRIGYKKTFRFDEE 92 
                           555556.4499999996549****6.333444566******************7765544***************************76 PP

                   NAM 112 .rapkgektdWvmheyrl 128
                            ++++ e+  W+++ey l
  PGSC0003DMP400062169  93 sSSQDKESVYWIVKEYCL 110
                           3666667889******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.841137IPR003441NAC domain
SuperFamilySSF1019413.66E-142136IPR003441NAC domain
PfamPF023659.9E-625110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKFIRGMPIE YHDIPYIDLY GNKEPAELFQ NSGNNHVNYF FTQLKRKTIK GKNFNRSTVG  60
GSKWKGRDNS KEILDKERSR IGYKKTFRFD EESSSQDKES VYWIVKEYCL DKTTMDVLRE  120
RGEIRHEDSV VCFITKKVNL GKNHQDISIT TENIVPDCVS NSLRDRDGWL YAAKIWQLPS  180
LDEPFKVLTD EELDYFDTPD PEYPHAYI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170300.11e-155PREDICTED: uncharacterized protein LOC107063224
TrEMBLM1DKI31e-154M1DKI3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000904941e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-08NAC domain containing protein 96
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]