PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062261
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26887.8 Da    PI: 8.9489
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062261genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.89.1e-111051242
                          ---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-T CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifss 42
                          +ien++ r v++ +R++  l KA EL S+LCd+e a  i s+
  PGSC0003DMP400062261 10 FIENNTERRVSYRNRQKKFLTKARELnSTLCDVELATFINSP 51
                          8*************************9*******99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-10161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.741162IPR002100Transcription factor, MADS-box
CDDcd001204.62E-14360No hitNo description
SuperFamilySSF554556.15E-15396IPR002100Transcription factor, MADS-box
PfamPF003191.7E-81054IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVRKKVKLAF IENNTERRVS YRNRQKKFLT KARELNSTLC DVELATFINS PYHKKPEVFS  60
NHEATTSTFT KFEDLPEMDK SKNITTQEKQ IMKRINKIEN ELEKVRKENK KMEFTNQMYG  120
LLNGEEMPNS MHLEDLSDLN YVIIKSLKQI NDAIKAKTHE EGSTLNAPQT IVAPMDSGVT  180
SFDMSWDPLL APVDAPVLSE IPLLVTFTVP SGTNFERPRA PLNLVPVTSK FSTSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166932.11e-165PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1DKQ41e-172M1DKQ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000905861e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.13e-30M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]