PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062312
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 111aa    MW: 12836.8 Da    PI: 5.2189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062312genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-13251051599
                           -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            l++p + +++++++   +  l l+ + g + W++k+  r  ++++++ +GWkeFv +n+++  + + F +dg ++f  +v++f+k
  PGSC0003DMP400062312  25 ELRIPSSLVKRIKEEA-MGEVLLLKGRGGdKCWNIKI--REDGNAMFFHGGWKEFVLENHIEMAELLFFNYDGMNTF--TVRIFNK 105
                           589******9997554.454566666666899*****..********************************997777..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-1610109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2811106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-1711106IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1014106IPR003340B3 DNA binding domain
PfamPF023625.7E-1224105IPR003340B3 DNA binding domain
CDDcd100175.90E-1226104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MSNFGANPND ELSFYKIVLD PQMEELRIPS SLVKRIKEEA MGEVLLLKGR GGDKCWNIKI  60
REDGNAMFFH GGWKEFVLEN HIEMAELLFF NYDGMNTFTV RIFNKNGWEK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062312
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089472.21e-57B3 domain-containing protein Os11g0197600-like
TrEMBLM1DKU44e-75M1DKU4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000906376e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-13B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]