PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062358
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 140aa    MW: 15943.5 Da    PI: 9.1431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062358genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.76.9e-0961105353
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                           y+GVr  + +g++ A I        +  ++lg+f+ +eeAa  +++a + +
  PGSC0003DMP400062358  61 YSGVRKMP-WGKYKADITNQ-----KVCVWLGTFDRKEEAATTYVKATRMY 105
                           9*******.*******9882.....5****************999986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-1760117IPR001471AP2/ERF domain
CDDcd000186.46E-1460115No hitNo description
PROSITE profilePS5103215.13260115IPR001471AP2/ERF domain
SMARTSM003804.7E-1160121IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1461117IPR016177DNA-binding domain
PRINTSPR003673.6E-66172IPR001471AP2/ERF domain
PRINTSPR003673.6E-68197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MYVSGLGTLI HKKKPQGFMI RLRECITVLK PNLIFRCQED NLENGIVAIV TIVVTSTEIQ  60
YSGVRKMPWG KYKADITNQK VCVWLGTFDR KEEAATTYVK ATRMYRDLKA KINFPESNED  120
NLENEELNLE LTLALSGRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163300.16e-52PREDICTED: ethylene-responsive transcription factor 11-like
TrEMBLM1DKY46e-99M1DKY4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000906831e-100(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-16ERF domain protein 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]