PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062523
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 197aa    MW: 23394 Da    PI: 4.8187
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062523genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57335.62.5e-111001841297
                DUF573  12 eivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                           ++++L+ + d+k+ktg  p+    ++ +f+  s+ ++k+s++ l +Ki  +K+ +++ ++   ++++p ++++ d+++f+ls+++Wg
  PGSC0003DMP400062523 100 NLAILRTIWDYKSKTGDFPYPPSIELLDFIMYSLpNLKISREKLAKKIIAFKNNYNDAWEL--DEDNPGLDRPVDREMFNLSMRLWG 184
                           689******************9999999999998468************************..99*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.5E-9100184IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MLHENDHKKL RTDEEEGQKE VDGNQESDET GEGKTEGLDP NEGRKKERPN DLDEKEEEKE  60
RRRRRVAIKG KQPMYKLGMS KEGRQSDADY YDYDCDYHQN LAILRTIWDY KSKTGDFPYP  120
PSIELLDFIM YSLPNLKISR EKLAKKIIAF KNNYNDAWEL DEDNPGLDRP VDREMFNLSM  180
RLWGDQKGFY DDWKWK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14364RKKERPNDLDEKEEEKERRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062523
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-137HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1DLB61e-141M1DLB6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000908481e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1552367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.17e-07DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]