PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062767
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 300aa    MW: 34957 Da    PI: 4.6151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062767genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.7e-142102801488
                           T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             +++p +fa++ ++++   k ++l +e+g +W v++  + + +r ++++GW eF k+n++ +g+++ Fkl++ +
  PGSC0003DMP400062767 210 TYMTIPMRFAKRTNIVNM--KNMRLVNEEGIEWGVEI--EYTERRAIIKRGWTEFRKDNKIASGETIRFKLIQGR 280
                           459*******99998855..57***************..8888899************************99743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.279165IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-10565IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-11565IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-7563No hitNo description
SuperFamilySSF1019366.67E-16195285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-17195286IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.435197291IPR003340B3 DNA binding domain
CDDcd100172.39E-10198279No hitNo description
SMARTSM010193.4E-8200293IPR003340B3 DNA binding domain
PfamPF023622.9E-12209281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MLNPVFLQAP YGKAWEVEVE HSQGQIWLVK GWKEFSDYYA ISIRQFLIFG YNARDHFDVT  60
IFDMSTTEIE YPIEDIESDD SMDMLDHFAE NLSHGPLVEK RRRKRQEGEE EDDSRVNLQT  120
NANVIEEEEE DIPINLQTNA NALEEEESQE ISEGCEEHEQ KPKIGTDQEV GEANHRSEEI  180
GSKNNSRYSV VNLTGDTPYF EIVIKKTHTT YMTIPMRFAK RTNIVNMKNM RLVNEEGIEW  240
GVEIEYTERR AIIKRGWTEF RKDNKIASGE TIRFKLIQGR VANVLQVQKI PTPHSLRYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062767
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-140HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.11e-130PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM1DLV30.0M1DLV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000910920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]