PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062847
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18752.6 Da    PI: 7.8898
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062847genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.63.7e-09446345
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          ie+++ r ++fskR+++++  Ae L +  + ev v++fs+  k
  PGSC0003DMP400062847  4 IESERARAISFSKRKKTLFQDAEKLATRSGDEVGVMLFSPGEK 46
                          9**************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-14170IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-6153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.909154IPR002100Transcription factor, MADS-box
PfamPF003192.9E-13450IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MQLIESERAR AISFSKRKKT LFQDAEKLAT RSGDEVGVML FSPGEKPFSY GSTSIEEIID  60
KFLKVKLEQR DHAEGKSVGF GAFKDLRKEL QELNEKERRR ILMYKIMHPG SEIPSDKHME  120
EKKVAMLLWV KEILNETKSA ILSKHFKFDL NVLPEPEEHE SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062847
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-132HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168956.11e-114PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DM111e-113M1DM11_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000911721e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-15AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]