PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062952
Common NameLOC107061690
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20896.6 Da    PI: 6.5326
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062952genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF436e-141563149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k+ienk     tf+kRr+g+ KK +EL + C++++ ++++sstgk + +
  PGSC0003DMP400062952 15 KKIENKDSMFATFTKRREGLYKKSSELATECNVDIGIMMISSTGKPHSF 63
                          68******************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.563767IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-18766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-21877IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-12929IPR002100Transcription factor, MADS-box
PfamPF003195.7E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERKKTKGRQ KIPMKKIENK DSMFATFTKR REGLYKKSSE LATECNVDIG IMMISSTGKP  60
HSFFHPTVNA VISRFQNPDM QLGESTNLEA NAARNEVNQL KTRLEELDVI EDIAIAKKNS  120
YEQMEETRQK GWWESTEKLN PDEVFIFETW LNETSSNLHH RLNQLEIEAS SSMRYESFGV  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062952
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166885.11e-133PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DM881e-131M1DM88_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000912771e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-23AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]