PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062960
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 148aa    MW: 16943.3 Da    PI: 10.305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062960genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1777127155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++y+GVr +k + rWvAeIrd+++   +kr +lg+f+ta eA  a+++a  +++g
  PGSC0003DMP400062960  77 KKYRGVRLRK-WERWVAEIRDVRT---NKRCWLGSFDTALEASLAYDKATIEIKG 127
                           59******99.**********865...3*********************988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381239.8E-313147IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.69E-2477133No hitNo description
Gene3DG3DSA:3.30.730.103.1E-2478134IPR001471AP2/ERF domain
PfamPF008474.1E-1178127IPR001471AP2/ERF domain
PROSITE profilePS5103218.46578135IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-1878134IPR016177DNA-binding domain
SMARTSM003809.2E-2678141IPR001471AP2/ERF domain
PRINTSPR003675.1E-77990IPR001471AP2/ERF domain
PRINTSPR003675.1E-7101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGERSVVLPR VVRIYIMDND ATNSSSDEEE NFQGEKSKRH KRICKEIIIR NGKTKVTSKM  60
VSSKEKKDTT LLQENAKKYR GVRLRKWERW VAEIRDVRTN KRCWLGSFDT ALEASLAYDK  120
ATIEIKGANA VTNIIETPSK ESNTIHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769795.12e-73LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF069-like
TrEMBLM1DM951e-103M1DM95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000912851e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-27cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]