PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062968
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 171aa    MW: 19116.8 Da    PI: 4.8855
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062968genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.6e-1937127199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k ++ps+v+   +l++pk+f+ +h  k   +  ++l de+g +++ k+ + k++    l++GW++F  a++L e+D++vF+l+++ +
  PGSC0003DMP400062968  37 FLKCMLPSHVTGGFCLSFPKRFCVSHLPK--HDANIVLVDEDGDEFSTKYLIGKSG----LSGGWRGFSIAHNLVENDVLVFQLIETCK 119
                           89************************433..4568***************666665....9************************9999 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v+++r+
  PGSC0003DMP400062968 120 F--KVHILRE 127
                           9..8998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-2231129IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2432128IPR015300DNA-binding pseudobarrel domain
CDDcd100178.37E-2835126No hitNo description
SMARTSM010191.5E-1937128IPR003340B3 DNA binding domain
PfamPF023622.8E-1737127IPR003340B3 DNA binding domain
PROSITE profilePS5086311.94237128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MCIGRKGQTD NSVDISSSAQ VRAEIFETTL PAEFPHFLKC MLPSHVTGGF CLSFPKRFCV  60
SHLPKHDANI VLVDEDGDEF STKYLIGKSG LSGGWRGFSI AHNLVENDVL VFQLIETCKF  120
KVHILRENCL SPIDVAVVLM DFIVEAHNED QNEKMNMCEA NEDKYLEPHE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062968
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240808.13e-64B3 domain-containing protein Os01g0234100-like
RefseqXP_019257390.12e-64PREDICTED: B3 domain-containing protein At5g42700-like isoform X2
SwissprotQ0JP993e-39Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
SwissprotQ69V362e-39Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM1DMA01e-123M1DMA0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000912931e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-38B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]