PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400063095
Common NameLOC107062621
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 232aa    MW: 26184 Da    PI: 9.36
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400063095genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-133075247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +rW+++E+  ++ + ++lG+g+W+ Ia+ +   Rt  q+ s+ qky
  PGSC0003DMP400063095 30 KRWSEDEHRAFLSGLEKLGSGNWTEIAKQFVPSRTKTQISSHAQKY 75
                          69****************************99*************9 PP
2Myb_DNA-binding34.64.3e-11148192247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           g+WT++E+e ++ +  + G + W+++++++   Rt+ q+ s+ qky
  PGSC0003DMP400063095 148 GKWTEDEHEAFLIGLDKVGRN-WTRVSKEFVPSRTPTQITSHAQKY 192
                           89*****************66.*********9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2922380IPR017930Myb domain
SuperFamilySSF466891.94E-142580IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-142777IPR006447Myb domain, plants
SMARTSM007178.9E-102878IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-122874IPR009057Homeodomain-like
PfamPF002492.0E-113075IPR001005SANT/Myb domain
CDDcd001672.68E-93176No hitNo description
PROSITE profilePS5129417.358142197IPR017930Myb domain
SuperFamilySSF466892.28E-14143198IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-13145195IPR006447Myb domain, plants
SMARTSM007171.3E-7146195IPR001005SANT/Myb domain
PfamPF002494.2E-9148192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-10148193IPR009057Homeodomain-like
CDDcd001671.56E-5149193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGDSNRSFKL FGVTISTDDN EDSASRNKGK RWSEDEHRAF LSGLEKLGSG NWTEIAKQFV  60
PSRTKTQISS HAQKYFAWLK TKNDKAAKST STVELSSSTT SEKETLNEEI PLSPMPINYR  120
VPNDFVPHVS NTVNNGDSVD FLSRKQEGKW TEDEHEAFLI GLDKVGRNWT RVSKEFVPSR  180
TPTQITSHAQ KYFDNQKNNR GPKRSVFEIN FDQESTSTCP ESVKKGKEVL K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400063095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168972.11e-171PREDICTED: transcription factor MYB1R1-like
TrEMBLM1DMJ71e-169M1DMJ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000914201e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1855144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.14e-18MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]