PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400063103
Common NameLOC107060701
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20073.7 Da    PI: 7.5093
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400063103genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.61.1e-101559145
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          k+ie +   + +fskRr  + KKA+ L   Cd+++ +i+fs++g+
  PGSC0003DMP400063103 15 KKIEKQDDLYASFSKRRLSLHKKASDLVFECDVDIGMIYFSPKGN 59
                          57888889999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.745767IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-13766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-19878IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-9929IPR002100Transcription factor, MADS-box
PfamPF003197.5E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MENKKSRGRQ KIPMKKIEKQ DDLYASFSKR RLSLHKKASD LVFECDVDIG MIYFSPKGNP  60
FSFFHPNVDA VVSRFQNFDM EFSESALLIT AGNRDKVNEL KNRLDELDII EDIAITKKKS  120
YDDVIEARKR GWWESIEQLN AYEVTKFEAW MDTTNFNMQN RLNELKNGAS SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400063103
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164373.11e-125PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DMK51e-124M1DMK5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000914281e-125(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-21AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]