PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400063137
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 371aa    MW: 40725.5 Da    PI: 4.0801
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400063137genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.78.8e-102833681297
                DUF573  12 eivlLqGlidfkaktgkspsd.didafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                           ++++L+++ d++     sp+    ++   +vk+s  ++k+s++ l eKi  L k f++ +++   g++p+++++ d++if+ls++iWg
  PGSC0003DMP400063137 283 DLAILKAMCDYECIIRNSPQLpTFNNRLVYVKDSFpDLKMSREALEEKIIALCKSFNDVREQ--LGDDPEMARPIDREIFNLSMIIWG 368
                           489********9988877766599999999**998469***********************9..***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MRPMPRAKLG SPLMAGNGFA GTSTIFQCGS RGKNCGDPSS KPNLLGTGGL RGNEACYGGV  60
QQPHVAVVSP TTPSELPVST DPLLPLPYLG DAPLQSPHKH GTTTVPPILL PPPSFGKIPN  120
SLEQCRDGSG LHNSGEQRGE GDPPAGSSQH LSFDIPEQRE TEELNEEEAG GNQLVETDED  180
PNDDDEEEEE QIQNLGSGNN VNRQNSEVNE SGNQESEGGE NDENQEENTS WLVVVEEVED  240
DEEEDEEERR RTRVAEKGKQ PMGDQGGISI TELNDEDEDH HLDLAILKAM CDYECIIRNS  300
PQLPTFNNRL VYVKDSFPDL KMSREALEEK IIALCKSFND VREQLGDDPE MARPIDREIF  360
NLSMIIWGRR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400063137
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103561e-159AC210356.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0130B18, complete sequence.
GenBankHG9754461e-159HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-159HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1DMN80.0M1DMN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000914620.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1722155
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]