PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400063301
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 250aa    MW: 28692.6 Da    PI: 8.4293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400063301genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY857.1e-2786144259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           dD+++WrKYGqK++kgs+fpr+Y++C+++ +C+++k +e+s ++++++ + Y++eHnh+
  PGSC0003DMP400063301  86 DDKWAWRKYGQKSIKGSPFPRNYFKCSTSgSCKATKIIEKSPKNENYFLVSYSDEHNHD 144
                           8**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-2573146IPR003657WRKY domain
SuperFamilySSF1182909.68E-2379146IPR003657WRKY domain
PROSITE profilePS5081126.85480146IPR003657WRKY domain
SMARTSM007741.5E-2785145IPR003657WRKY domain
PfamPF031066.7E-2186144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MYYNPIQPTQ FCQQTFLPPL PTMLTCVPTT TTTPQESIDL QQQLVIQDQV YPNFTMPMPT  60
PLIKTFKRKN QSTRVVYEVL QEELTDDKWA WRKYGQKSIK GSPFPRNYFK CSTSGSCKAT  120
KIIEKSPKNE NYFLVSYSDE HNHDPPTYRK SLTLYNSSSK RKLPKSINIV PKALNLNASS  180
SSSKCAKRFK VDTSSISPTA PTLEIKRNNE MVDVVVENKN DIEEEENTYD NIFMDFEELQ  240
QVTTSILWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-1575146474WRKY transcription factor 1
5w3x_B3e-15871471880Disease resistance protein RRS1
5w3x_D3e-15871471880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400063301
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754426e-81HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158586.11e-130PREDICTED: probable WRKY transcription factor 27
TrEMBLM1DN190.0M1DN19_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000916260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-30WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]