PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400063325
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 260aa    MW: 30123.8 Da    PI: 9.8149
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400063325genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85.1e-1764113250
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
                SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50 
                           +i+++s+r++++ kR++g+lKK  EL +LCd+eva +i+++ +++ y+++
  PGSC0003DMP400063325  64 FIDDDSKRKISYNKRLKGLLKKSDELKTLCDVEVATVIYGTyRNEPYTFP 113
                           89*********************************999997478889987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.18955104IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-955115IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-1956150IPR002100Transcription factor, MADS-box
CDDcd002661.23E-1756138No hitNo description
PRINTSPR004041.1E-75777IPR002100Transcription factor, MADS-box
PfamPF003196.0E-1764112IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-77792IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-792113IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTVGERGNFR QNSPSNAPRG GVNPRQENHN YYCYYNKAIL TLISKQTHFS SPLTTTRNKV  60
NYAFIDDDSK RKISYNKRLK GLLKKSDELK TLCDVEVATV IYGTYRNEPY TFPNNDVVRN  120
TFIKFKELAT LDRSKNMVTR EEFTMQRIKK LEEQLQNVRK ENRVKEMTNE MYEVFERKAI  180
SVDMNPSYLN DLRCVIKKNL KQVRELTNVS SNGSTIFFSN ASTHGYWKNT WTDPSNAVNN  240
NVFSDSFTND GFSIAFTND*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16979KRKISYNKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400063325
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360673.17e-99PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1DN380.0M1DN38_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000916500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.14e-24M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]