PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400063515
Common NameLOC107060303
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 201aa    MW: 23336.9 Da    PI: 9.1377
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400063515genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.92.6e-0820412041
                          HHHHHHHHHHHHT-EEEEEEE- CS
                SRF-TF 20 ilKKAeELSvLCdaevaviifs 41
                          ++K A+ELS+LC++ v++ii+ 
  PGSC0003DMP400063515 20 LFKTAKELSILCGILVSIIILN 41
                          9******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-101886IPR002100Transcription factor, MADS-box
PfamPF003191.1E-51942IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTKNSDELRN EKKARDIADL FKTAKELSIL CGILVSIIIL NPGEFIPIMW PNEFEAKGIL  60
TRYLGFSEDE RCKKFVEHET YLTDKLIDRK LIIEEKVRRS EEKKSKFMFK QLYDKNVKVS  120
ELKLDAKEIR GLLKLSALTR VQLDERKKQF DQQSQNFQPA SLFCNFDSTT RNDVDHNDFQ  180
VVDTSLSLLV GRGIKRGRND *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400063515
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163514.11e-144PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLM1DNI41e-143M1DNI4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000918401e-144(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.11e-10AGAMOUS-like 36
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]