PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400063991
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 134aa    MW: 15491.7 Da    PI: 9.4201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400063991genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.9e-192711685
                          EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3 16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                          +v+p+++a ++      + + ++ ++d+s +sW++++ y+++s+++ +tkGW +Fv+a+ L ++D++vF l 
  PGSC0003DMP400063991  2 FVIPRRYAIKYfsH--IQHNEEIEFYDSSRNSWKFRFFYCQSSKKFSFTKGWHKFVRAKSLSARDTIVFNLY 71
                          89*********643..445569***********************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.957192IPR003340B3 DNA binding domain
CDDcd100177.04E-14170No hitNo description
Gene3DG3DSA:2.40.330.105.6E-17270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-17274IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-17271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MFVIPRRYAI KYFSHIQHNE EIEFYDSSRN SWKFRFFYCQ SSKKFSFTKG WHKFVRAKSL  60
SARDTIVFNL YEFKNGTNES CNTFVIDVVK NVEGLPMDLA LNPDAVDVDV ALTPVLLFGK  120
QIGWTKTKSG NEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400063991
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-114HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165219.13e-96PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLM1DPJ98e-95M1DPJ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000923161e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1637544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.14e-15RAV family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]