PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400064060
Common NameLOC107062524
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22038.9 Da    PI: 8.8431
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400064060genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-181457245
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          r +n++n qvtfskRr+g++KKA+ELS+L +a++a++ f +++k
  PGSC0003DMP400064060 14 RNQNQTNLQVTFSKRRAGLFKKASELSTLGGANIAIVAFPPSNK 57
                          568***********************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-21564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.638565IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-21679IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-13727IPR002100Transcription factor, MADS-box
PfamPF003196.3E-181659IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-132742IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-134263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MRRPNGHRRI EIARNQNQTN LQVTFSKRRA GLFKKASELS TLGGANIAIV AFPPSNKEYA  60
CRYPSVESIV DKFVRENPPP DTDDPNPIIV AHQNANIDEI NEKLNKLERS LERERKHGQA  120
LQALRTKPSN EKLSFFDLKI LCESLEAADK KVEKLASQLM ECGIEFPYQT IGSALAPLRA  180
RESTSFDSGE GSSRSGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400064060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168710.11e-144PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DPP71e-142M1DPP7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000923851e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-24AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]