PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400064546
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 141aa    MW: 15751.2 Da    PI: 10.2447
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400064546genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-111663249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ie +  r+ +fskRr  + KKA+EL   Cd++  + i s+tgk y +
  PGSC0003DMP400064546 16 KIEKEAARYASFSKRRLSLYKKASELVRECDVDLGIFISSQTGKPYSF 63
                          7999****************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.745767IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-11766IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-8929IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-181083IPR002100Transcription factor, MADS-box
PfamPF003193.5E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEGKKTAGCQ KIPLEKIEKE AARYASFSKR RLSLYKKASE LVRECDVDLG IFISSQTGKP  60
YSFVHPTTNV VIDRFINPTT IDLGAQLAVA EARNKVIQNN ERLNEFDARE KAAKKKIRSM  120
DQMNEARVKR LVGGHGPIQC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400064546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-134HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162384.12e-67PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DQR01e-99M1DQR0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000928711e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2084333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-22AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]