PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400064589
Common NameLOC107062624
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 114aa    MW: 12819.1 Da    PI: 10.5843
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400064589genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-092971143
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                          ++rW+ +E++ ++ +  + G+g+W+ Ia+++   R+  q+  +
  PGSC0003DMP400064589 29 KDRWSVDEHKSFLMGLGKVGKGNWNQIAKRFVPSRSSTQVATH 71
                          68*****************************99****999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9112476IPR017877Myb-like domain
SuperFamilySSF466896.13E-102583IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-102871IPR009057Homeodomain-like
SMARTSM007171.4E-52878IPR001005SANT/Myb domain
PfamPF002491.5E-72971IPR001005SANT/Myb domain
CDDcd001677.17E-63172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MKRNRWTEEK DKDVLVDESE NSGDHSNKKD RWSVDEHKSF LMGLGKVGKG NWNQIAKRFV  60
PSRSSTQVAT HAAETFFGRH NRNKATLKRN ILPSNESYAN VNVSSSTNVN SNV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400064589
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168975.15e-78PREDICTED: transcription factor MYB1R1-like
TrEMBLM1DQU81e-76M1DQU8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000929142e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.17e-14MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]