PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400064674
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 162aa    MW: 17220.2 Da    PI: 6.8997
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400064674genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.8e-091171026
                          GGTS--TTTTT-SS-SS CS
               zf-CCCH 10 artGtCkyGdrCkFaHg 26
                          ++tG+Ck+G +CkF+H+
  PGSC0003DMP400064674  1 MKTGQCKFGITCKFHHP 17
                          89**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006422.1E-6117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.131119IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKTGQCKFGI TCKFHHPLPA GVQVPASAAG LFPLPAALPP PATYPVLQSL SVDSAEQYGM  60
VTGNLPVIRP SLLPVSYIPD TYGPMLFPPG MVPVLDWTPY LVFILVQLVQ CHPKLLSMQL  120
EQVQFYGHTQ LSASAPAYAG PYVSLTASLA ASSSIQNEFC C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400064674
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754455e-99HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267357.18e-56PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLM1DR171e-111M1DR17_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000929991e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1598556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.12e-23C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]