PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400064726
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 143aa    MW: 15904.2 Da    PI: 5.299
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400064726genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23e-1327118498
                           E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                           +lt+s v  +  l+lpkk  +e         ++ + + +   ++W++++   + +++  ++++GW++Fv+ n+LkegD +vF+l+  + 
  PGSC0003DMP400064726  27 ILTKSAVKPTYSLYLPKKMNKELpsA-----GVPV-VLTCGRKKWNLYY--GGARSTyKFISTGWRKFVDGNNLKEGDGLVFELSeCSt 107
                           57888899999999***998777432.....3334.455688*******..666666568899********************986555 PP

                           SEE..EEEEE- CS
                    B3  88 sefelvvkvfr 98 
                           s+ e++v+++r
  PGSC0003DMP400064726 108 SKIEFRVQILR 118
                           77788888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.55E-1620118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1421118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.61924120IPR003340B3 DNA binding domain
CDDcd100173.78E-1527118No hitNo description
PfamPF023624.8E-1127118IPR003340B3 DNA binding domain
SMARTSM010193.3E-628120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MMESIGSSEI DNDEYWPLSG KPYVDIILTK SAVKPTYSLY LPKKMNKELP SAGVPVVLTC  60
GRKKWNLYYG GARSTYKFIS TGWRKFVDGN NLKEGDGLVF ELSECSTSKI EFRVQILRGD  120
FPAELIPEDV EGTKSENPII LG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400064726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169749.12e-96PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLM1DR544e-99M1DR54_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000930511e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-11B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]