PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400064994
Common NameLOC102578434
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20539.5 Da    PI: 7.6717
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400064994genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.2e-121663249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ien+    ++fskR  g++K A+EL +  d+++ +i+fs+tgk + +
  PGSC0003DMP400064994 16 KIENEKALLTSFSKRHLGLFKTASELVTEFDVDIGIIVFSPTGKPHSF 63
                          699999*************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-18766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.787767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-18879IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-8929IPR002100Transcription factor, MADS-box
PfamPF003192.6E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MENKKTKGRQ KIPMRKIENE KALLTSFSKR HLGLFKTASE LVTEFDVDIG IIVFSPTGKP  60
HSFFHPIVDA VVSRFQNPDM QLSDDTHRAM VFARNSVNQL KKKLEELDIK EKVEIDRTNY  120
FDKMTETRQK GWWESIEQLN EDEVSKFEAW LNVASFTMHY HLNQLIVSSS LGCGSCGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400064994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349650.11e-132PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DRP71e-130M1DRP7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000933191e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.15e-23M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]