PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065030
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 242aa    MW: 27970 Da    PI: 8.5809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065030genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141663148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W+++Ed++l+ ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
  PGSC0003DMP400065030 16 KGAWSPDEDQKLKSYIMKFGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 63
                          79******************99************************97 PP
2Myb_DNA-binding43.86e-1469114148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T eE e+ ++  ++lG++ W++Ia +++ gRt++++k++++++l
  PGSC0003DMP400065030  69 RGPFTMEEVEIVIKTYQELGNR-WSAIAGRLP-GRTDNEIKNFFHTHL 114
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0821163IPR017930Myb domain
SuperFamilySSF466898.79E-2913110IPR009057Homeodomain-like
SMARTSM007176.0E-121565IPR001005SANT/Myb domain
PfamPF002493.7E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-221770IPR009057Homeodomain-like
CDDcd001672.80E-91863No hitNo description
PROSITE profilePS5129422.54864118IPR017930Myb domain
SMARTSM007177.0E-1268116IPR001005SANT/Myb domain
PfamPF002493.5E-1269114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2471118IPR009057Homeodomain-like
CDDcd001677.78E-871114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MPRVQLQQQQ STNMKKGAWS PDEDQKLKSY IMKFGIWNWS HMPKFAGLSR TGKSCRLRWM  60
NYLRPDIKRG PFTMEEVEIV IKTYQELGNR WSAIAGRLPG RTDNEIKNFF HTHLKKQLGV  120
KNVASMKRTK RILVKKDKDQ NEMTNICADK SSPNVCNYSL EKSNTTIITW EENEMTDIVS  180
SSNTVVDDME IRQPVILGSN PEIEKISTNN VDCHLCQFEY PHPCTLSGLD FFLQFDVLWD  240
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-241411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065030
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-170HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068505.11e-159transcription factor WER-like
SwissprotQ9SJX85e-46MYB14_ARATH; Transcription factor MYB14
TrEMBLM1DRS70.0M1DRS7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000933550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-48myb domain protein 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]