PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065207
Common NameLOC102585103
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 168aa    MW: 19131.7 Da    PI: 4.6115
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065207genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.53.7e-279108199
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqle 88 
                           +Ca Ck++++ C ++C+lap fp+++  +f  v +l++ ++++++l+++  +e + +++++l+ eA++r ++PvyG+++vi kl+ ++e
  PGSC0003DMP400065207   9 KCAPCKYQNNICDENCPLAPFFPSNKVDEFDKVIRLYSIDTLINMLNSVTANEkKAKMAETLILEAKIRYENPVYGSLAVIEKLNLEIE 97 
                           5************************************************6555389999****************************** PP

                DUF260  89 qlkaelallke 99 
                           ++++el+l+++
  PGSC0003DMP400065207  98 ETQKELDLVQK 108
                           ******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4298110IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-289107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MNDVDARGKC APCKYQNNIC DENCPLAPFF PSNKVDEFDK VIRLYSIDTL INMLNSVTAN  60
EKKAKMAETL ILEAKIRYEN PVYGSLAVIE KLNLEIEETQ KELDLVQKTN AFYKELSERS  120
SLNKKNEEIS TSSTQSLQEY MSNLTLEEAM SITEHPIIQD VKKDHNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065207
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-129HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341223.11e-120PREDICTED: LOB domain-containing protein 24-like
TrEMBLM1DS571e-118M1DS57_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000935321e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.14e-20LOB domain-containing protein 23
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]