PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065322
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 145aa    MW: 16730.9 Da    PI: 4.7692
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065322genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.14.1e-12350249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ien+  r++ fskRr ++ KKA+EL    d++v + +fs+t+k y +
  PGSC0003DMP400065322  3 KIENEDARYTAFSKRRSTLYKKASELVGKYDVDVGITLFSPTDKPYSF 50
                          59****************************************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-6153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.731154IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-17273IPR002100Transcription factor, MADS-box
PfamPF003191.2E-17350IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MVKIENEDAR YTAFSKRRST LYKKASELVG KYDVDVGITL FSPTDKPYSF FHPTMDAVVN  60
RFLSPNTQPS ESNRIDIANS RNKVKELKVE FDELDIIERG ISNSKSGMDE TDMKKMWESI  120
MKFNEEEVNE LKLWLNSVDF ELTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-126HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886043.12e-80agamous-like MADS-box protein AGL62
TrEMBLM1DSE61e-100M1DSE6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000936471e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-19AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]