PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400065338

Common Name

LOC107063494

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HSF

Protein Properties

Length: 247aa MW: 28707.9 Da PI: 9.7721

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400065338	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109	3.5e-34	31	122	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 F++k+y+++ed++ +++i ws++g+sfv++d+++f+ +vLpkyFkh+n++SFv QLn YgFkk+ ++ we+ h +F++gk PGSC0003DMP400065338 31 FVTKTYDMVEDPNSNSIICWSSSGTSFVIWDHNRFSFEVLPKYFKHTNMSSFVYQLNNYGFKKIGLQK---------WEYGHYWFQAGK 110 9*************************************************************9998.........******** PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++ikr+ + PGSC0003DMP400065338 111 KHLLCNIKRRMK 122 *******976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.5E-35	27	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.4E-48	27	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.54E-32	28	120	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.2E-17	31	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-30	31	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-17	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-17	82	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MAMNNMNQFS SGEIGHGIGD GAKREPGIAP FVTKTYDMVE DPNSNSIICW SSSGTSFVIW 60 DHNRFSFEVL PKYFKHTNMS SFVYQLNNYG FKKIGLQKWE YGHYWFQAGK KHLLCNIKRR 120 MKNLNAHRDF NQETYFYGVE EEMRSQRDLN ITLKSEFEKL KERQDDMVKG IASLKEYLEK 180 SEAESRKFLC FLAKAVKQVV ATKRDVEVRD VIMSKRRAED VMGSSKSSEK KKMIDFSAIK 240 RVHDIM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-28	18	121	16	130	Heat shock factor protein 1
5d5v_B	4e-28	18	121	16	130	Heat shock factor protein 1
5d5v_D	4e-28	18	121	16	130	Heat shock factor protein 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400065338

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212434	1e-157	AC212434.2 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence.
GenBank	HG975523	1e-157	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015170900.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
TrEMBL	M1DSF9	0.0	M1DSF9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400093663	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13740	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-43	heat shock transcription factor A2

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400065338
Entrez Gene	107063494

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]