PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065699
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20843.5 Da    PI: 5.6652
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065699genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.8e-20245447
                          -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          +n++n+qvtfskR  g++ KA+EL++LC+a v v+ifss++k+y
  PGSC0003DMP400065699  2 KNSRNKQVTFSKRHIGLFRKASELCTLCGAYVVVVIFSSSNKVY 45
                          79****************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-16150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.077151IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-20264IPR002100Transcription factor, MADS-box
PfamPF003193.1E-20246IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-71328IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-72849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKNSRNKQVT FSKRHIGLFR KASELCTLCG AYVVVVIFSS SNKVYSCGHP SVELIVDKFL  60
RENPQPDSDS PNPTIVAHQN LNVDEINNEL NKLENSLERQ KKHGEALKSL RNELAYEQLN  120
FFNLKMSSKI LVATDEEVER VAGQLMECNI EFPYQTIRSA LDPLRVEENC LSDFDEGPSR  180
SHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065699
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340409.13e-90PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DT801e-132M1DT80_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000940241e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-24AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]