PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065718
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 150aa    MW: 17174.3 Da    PI: 4.5106
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065718genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.33.5e-071641227
                          ---SHHHHHHHHHHHHHHHHHHHHHH CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeEL 27
                          +ien+  r++ fsk r ++ KKA+EL
  PGSC0003DMP400065718 16 KIENEDARYTVFSKLRSTLYKKASEL 41
                          59***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.068741IPR002100Transcription factor, MADS-box
SMARTSM004320.0092754IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-8741IPR002100Transcription factor, MADS-box
CDDcd001205.10E-11841No hitNo description
PfamPF003191.1E-71641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MAEKNTLGRQ KISMVKIENE DARYTVFSKL RSTLYKKASE LVGKYELIPN TQPNESNCIA  60
IANSRNKVKE LKVELDELDI IERGLSNPTS GTEETDMKKM WKFVMKFNEE ELNELELWLN  120
SFDFDLKNYL SQLENDASSS TQAPPENVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065718
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754484e-96HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365607.13e-70PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DT981e-104M1DT98_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000940431e-104(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-08AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]