PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065737
Common NameLOC102593276
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23700.1 Da    PI: 9.1013
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065737genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.37.3e-221663249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+t k y +
  PGSC0003DMP400065737 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPTRKAYSF 63
                          58888899***********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.19E-27786IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-30766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.773767IPR002100Transcription factor, MADS-box
CDDcd002651.96E-32876No hitNo description
PRINTSPR004041.0E-17929IPR002100Transcription factor, MADS-box
PfamPF003195.1E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAKKPSMGRQ KIKIAKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPTRKA  60
YSFGHINVES IIDRFLSRNP HPISNNPPHL FESHNKHDVN VYELNLQLTQ IFDEVEVEKK  120
KSEAFDQMRK NCESQYWWEA PIGELAYHEL EQLKNSLEDF KKNVITHASK IMVENSNKSF  180
FKPVMDVSNY PHNHAFGNDH HGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-15798192MEF2C
5f28_B4e-15798192MEF2C
5f28_C4e-15798192MEF2C
5f28_D4e-15798192MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355292.11e-152PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DTB51e-150M1DTB5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000940621e-151(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-53AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]