PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065842
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 102aa    MW: 11589.7 Da    PI: 10.7814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065842genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.0002514453151
                          ..............TTS-STCHHHHHHHHHHH CS
                   HLH 31 s...........kapskKlsKaeiLekAveYI 51
                          +            +++k+ +K  iL+kA+  I
  PGSC0003DMP400065842 14 FatmkakeqgkdTTGQKRANKLKILRKAILVI 45
                          155555566663445556***********888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MPNLCSKLML KCLFATMKAK EQGKDTTGQK RANKLKILRK AILVITKTTR RAIEWLFSSP  60
KVPACQPWGR TDLATEMGSR WIIELIRDSN LDRLKSQNLE D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065842
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1DTJ83e-67M1DTJ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000941675e-68(Solanum tuberosum)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]