PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065905
Common NameLOC107059537
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 125aa    MW: 14184.8 Da    PI: 7.2598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065905genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.8e-111856446
                   AP2  4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46
                           GVr +k +g++ AeI++ +     + k ++lg+f ta+eA + +
  PGSC0003DMP400065905 18 VGVRKRK-NGKFCAEIKHpF-----NkKLIWLGTFNTADEASESY 56
                          6***999.8*********55.....34**************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-51570IPR001471AP2/ERF domain
PROSITE profilePS5103213.2481673IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-111864IPR016177DNA-binding domain
CDDcd000182.57E-141856No hitNo description
PfamPF008472.3E-41856IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-141964IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MKSYKRTSKN SSVRLYPVGV RKRKNGKFCA EIKHPFNKKL IWLGTFNTAD EASESYKSKN  60
LDFEEQVMAK NAKEGQISQI SDQESCLNDE SKQKSLMDVP KNSNSSNGVE EKVKEEIENE  120
TDEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065905
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161600.13e-86PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLM1DTP76e-85M1DTP7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000942301e-85(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50751534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.24e-14ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]