PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066080
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 222aa    MW: 25235 Da    PI: 9.7234
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066080genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like217.6e-07181199422
               G2-like   4 lrWtpeLHerFveaveqLG 22 
                            +Wt +LH++F +aveqLG
  PGSC0003DMP400066080 181 AKWTVDLHSKFTKAVEQLG 199
                           58****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-5177200IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSMLSKEKKK IDMMIIVVNS SDLHCFELFT PAVTLNIISL VVCDKLNRLL AKSALENGAY  60
FCLENQFNKE IVKYLWQLVL REKIQREKSI NGLEANGRNH MNVDEIYDNN IVRDEQQFGE  120
KNMNVDTEEH NNNIHKAEND GVSTGKYKLK RKRGRKGIKQ INEGESRRGV INKTGTRKNC  180
AKWTVDLHSK FTKAVEQLGQ GMISSKLHPY GTCRMLSGGD S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2656640.0AF265664.1 Solanum tuberosum resistance gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168890.11e-52PREDICTED: two-component response regulator ARR1-like
TrEMBLM1DU281e-162M1DU28_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000944051e-163(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.17e-06response regulator 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]