PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066082
Common NameLOC102580558
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23681.4 Da    PI: 5.4387
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066082genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.74.1e-251459247
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          r++n++nrqvtfskRrng++KKA+EL++LC+a vav+ifss++k+y
  PGSC0003DMP400066082 14 RVQNSRNRQVTFSKRRNGLFKKASELCTLCGAYVAVVIFSSRNKIY 59
                          789*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-30564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.123565IPR002100Transcription factor, MADS-box
CDDcd002653.23E-31774No hitNo description
PRINTSPR004041.7E-20727IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-26778IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241460IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-202742IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-204263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRGLNCRRRI TIARVQNSRN RQVTFSKRRN GLFKKASELC TLCGAYVAVV IFSSRNKIYS  60
CGHPSVEFIV DKFLGENPQP DTNASNPDTD APNPNTDAPN PIVVTHQNAY VDEINKKLNK  120
LENSLEREKK YGEALQSLRN ELPYEKIDFL NLKKLSEALE AADEEVERVA SQLREGDIEF  180
PYQIIGSALA PLRVEENNSS DPDEGSSGSH E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-15788383MEF2 CHIMERA
6byy_B5e-15788383MEF2 CHIMERA
6byy_C5e-15788383MEF2 CHIMERA
6byy_D5e-15788383MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-139HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340409.11e-155PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DU301e-153M1DU30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000944071e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-31AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]