PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066113
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 303aa    MW: 32989 Da    PI: 8.7234
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066113genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.83.1e-3742140199
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           aCaaCk++rr+Ca+dC lapyfp e++k+f n+hklFG++n+lkll+++++ +r++am++l++eA++ra dPv G++++i++lq+ ++ 
  PGSC0003DMP400066113  42 ACAACKYQRRRCAPDCLLAPYFPVERNKEFLNAHKLFGVNNLLKLLRNVEPFQRDNAMKALIFEANIRAGDPVGGCYRIIMNLQRLINL 130
                           7**************************************************************************************** PP

                DUF260  90 lkaelallke 99 
                            ++el+ + +
  PGSC0003DMP400066113 131 YETELQFTYN 140
                           **99998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.26541142IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-3642137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTNIVNHNQN VSSSSSLNTT TTITRVASRG CGGGSGGNGS QACAACKYQR RRCAPDCLLA  60
PYFPVERNKE FLNAHKLFGV NNLLKLLRNV EPFQRDNAMK ALIFEANIRA GDPVGGCYRI  120
IMNLQRLINL YETELQFTYN EIFRVQAVDI QNNINTKTNS VQLNNSIGRG FNRSCIGDSS  180
KGINSIGGSG ESSKRVNTID GFGESTKGIN SISGFGESSK EIISIGINSI DGSNRSESLN  240
SRIIKVELLD DFNDEFEMKA DEFETKVAIS SSKGKQSVVE NGDFKPYFGN NCKGKGVARY  300
VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-28351445113LOB family transfactor Ramosa2.1
5ly0_B1e-28351445113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-173HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361003.10.0PREDICTED: LOB domain-containing protein 6-like
TrEMBLM1DU550.0M1DU55_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000944380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA142941012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-34LOB domain-containing protein 22
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]