PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066263
Common NameLOC107061206
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 520aa    MW: 57399.4 Da    PI: 9.2217
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066263genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-11177221549
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                           k   rk++NRe+A  sRqRKk +++eLe+k+  + +  + L  +l
  PGSC0003DMP400066263 177 KGMARKIRNRESAHLSRQRKKHYVKELENKFRIFHSAIQHLNANL 221
                           5567***************************99988877777555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.6E-8173237IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.9E-9179234No hitNo description
PfamPF001702.3E-9179221IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-11180235No hitNo description
CDDcd147041.19E-14180228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MTTTYQENVE DFPVEFQNVN FKTDDIILDE LFNDIFPNPT NDDAFQNPSC MPYCLRSESG  60
LDSSQMNPHS FGQPESQLMV SSDDASRTSN STLGYCLGEA PVSKNPVHFS LNLGKNSIKG  120
GVVEHKLKLQ SVNCNISNCS YLLKRKKSNE DSNDVSKHQK STIFSLSDNV NNDEDEKGMA  180
RKIRNRESAH LSRQRKKHYV KELENKFRIF HSAIQHLNAN LSYAMAENVT VMAQLGGTGV  240
PAQVSPPPEI YPYPPPWMSY TPSYMMSRQG SQVPLVPIPK LKSQSLAPAP KISKNVEKKK  300
SEVKTKKVAS VSFLGVLFFM MLFGGLVPLL KLRYVGYSAK YSGKDHSSHC GRGGHGESNQ  360
KNTNKAANKF VHVGNGSDPL AASLYFPRND KLVEIDGNLI IQYVSASEKA MAFHGSADKK  420
NRETGLTVPG DLAPVIPGIH PRLYRSPVMG QIILGSKEKE NVKSTMQEWY LEGLAGSKSL  480
SRILVVVLID SVKYVTYSCM LPFKGSAPLV NAPEDGVFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066263
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-166HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165531.10.0PREDICTED: bZIP transcription factor 17-like
TrEMBLM1DUF70.0M1DUF7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000945880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30292450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.17e-31bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]