PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066335
Common NameLOC102592204
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 166aa    MW: 19317.5 Da    PI: 9.8138
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066335genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF421.2e-1321481340
                          HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
                          + +R + ++KKAeELS+LCd+eva+iif
  PGSC0003DMP400066335 21 LDRRETSLFKKAEELSILCDVEVAIIIF 48
                          5567888*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-4160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.708148IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-141294IPR002100Transcription factor, MADS-box
PfamPF003193.6E-121549IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MATKRLRDTR NYSENVRNSI LDRRETSLFK KAEELSILCD VEVAIIIFRL GKIQPITWKS  60
TILAQDVLTR YLSFIEVKRL EKLVTHEDYL QKKVDKKEEQ ISKLEKMNEA KEMEILFNQL  120
VEGKSIDELD AREMKGLLKV FAAKLAKLDE RKKELNQPPN PPSNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066335
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344958.11e-116PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLM1DUL31e-114M1DUL3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000946601e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.17e-14AGAMOUS-like 96
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]