PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066385
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 254aa    MW: 28287.3 Da    PI: 9.061
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066385genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.19.6e-091401672754
               G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYR 54 
                             Pk+ile+m+v+gLt+ +v+S LQ  R
  PGSC0003DMP400066385 140 CLPKEILEIMNVPGLTRMQVASYLQNIR 167
                           57***********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-125075IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-12140167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSFNNEEQSN NIHETERKTY NLRSKRCRRG KNVIDKGERQ STAISKTVKP KDCIEWTVDL  60
RAKFKEATQR LGKGLVLELV KLKGFMLKNS WILEVSVSSC LAPLCFLVWL VTTWFNIEIA  120
SRNSAVVTSS WGCTSGALGC LPKEILEIMN VPGLTRMQVA SYLQNIRDSS SIQPNGHGSE  180
YDQVYSADQI CAASGHSAKL VGIVDRVGDP SFSQVYRPFA SSSAFYRSVA LGDRGLPHQF  240
VQQFADFLFL SQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066385
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1DUQ30.0M1DUQ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000947100.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]