PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066561
Common NameLOC102594286
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20671.5 Da    PI: 7.6716
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066561genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.83.8e-151564150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          k+ienk     tf+kRr+g+ KKA+EL + Cd+++ ++++s+ gk + ++
  PGSC0003DMP400066561 15 KKIENKDAMFATFTKRREGLYKKASELVTECDVDIGIMMISPAGKPHSFI 64
                          68******************************************988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-20766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.198767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-21879IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-12929IPR002100Transcription factor, MADS-box
PfamPF003194.5E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERKKTKGRQ KIPMKKIENK DAMFATFTKR REGLYKKASE LVTECDVDIG IMMISPAGKP  60
HSFIHPIVDA VISRFQNPNM QLSESTNLEA NVARDEVNQL KNKLKELDVA EDIAIAKSSS  120
YDQMKETRQK GWWESIEQLS ANEVFIFGTW LNETSSNMHH RLNQLEIEVS SSTRYESFGV  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066561
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361360.11e-133PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DV351e-132M1DV35_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000948861e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-26AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]