PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066732
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 167aa    MW: 19022.5 Da    PI: 8.4393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066732genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.54.6e-1221612059
                          S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                          + r+Y++C+++  C++kk + +s ++++++ + Y+geHnh+
  PGSC0003DMP400066732 21 CKRNYFKCSTSrFCEAKKIIAKSPKNENYLLVSYSGEHNHD 61
                          68******99879***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.381163IPR003657WRKY domain
SMARTSM007744.3E-51462IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-102062IPR003657WRKY domain
PfamPF031066.7E-92061IPR003657WRKY domain
SuperFamilySSF1182909.15E-92062IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQDEVYPNLS MPRKTPLIET CKRNYFKCST SRFCEAKKII AKSPKNENYL LVSYSGEHNH  60
DPLTYRRSLA LYSNSSKNKF PKGINIVPKA LNLNASSSSS QRAKRLKVDA SSIIRTIATL  120
EIERNNKTVD VVTENKDDGE EEENAYEKIF MGFEEFQEVT ASILWE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066732
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158588.18e-99PREDICTED: WRKY transcription factor 22-like
TrEMBLM1DVH41e-119M1DVH4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000950571e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-11WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]