PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066737
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 283aa    MW: 32556.1 Da    PI: 9.5636
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066737genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.94.7e-121049241
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                          +ie++s+r++++ kR++ +lKK  EL + Cd+eva +i+ 
  PGSC0003DMP400066737 10 FIEDDSKRKISYYKRLKRLLKKSDELKTPCDVEVATLIYD 49
                          8**********************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-4161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.507148IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-17296IPR002100Transcription factor, MADS-box
CDDcd002663.07E-15284No hitNo description
PfamPF003191.3E-131058IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTRNKVNYAF IEDDSKRKIS YYKRLKRLLK KSDELKTPCD VEVATLIYDP YRNEPCTFPN  60
NDVVRNIFIK FKELPTLERS KNMVTRQEFT IKKIKKLEEQ LQKVRKENRV KEIINEMYAV  120
FERKTIFVDM DSSYLNDLCC VIKKNLKRVR KLMIKEDDGE GSTSNAPQPI VEPMVPTRNN  180
SEGPRYPSPL LFSQMFPPMV PQLFSPMPHH MAVGKTPGLT HPMPSTIRDS LIPSPTMDSL  240
MPSPMIDSSM PSLIMDPRMY SPVSPTLTQQ MESSMDIPSI GI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11525KRKISYYKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167329.11e-154PREDICTED: MADS-box transcription factor PHERES 2-like
TrEMBLM1DVH90.0M1DVH9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000950620.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-15AGAMOUS-like 80
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]