PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066766
Common NameLOC107060705
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17530.9 Da    PI: 10.146
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066766genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.8e-141259249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +i  ++ r vtfskRr+g++ KAeEL  L   +v  ++fs+ +k y+y
  PGSC0003DMP400066766 12 KITKQTARMVTFSKRRKGLFRKAEELESLSSSRVTSVVFSPLDKPYTY 59
                          68999***************************************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-15362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.82363IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-18468IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-13525IPR002100Transcription factor, MADS-box
PfamPF003193.4E-181259IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-132540IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-134061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGTGKKKIEI EKITKQTARM VTFSKRRKGL FRKAEELESL SSSRVTSVVF SPLDKPYTYG  60
DVNYVIKRHF SSCIRPKIST PVMNSHHSSS DVSDESSGSK SSSTPNGNGL RSWVEDIDVE  120
GYQNLNQLLM LKEQLEGTRK KIVSKDSESF QAWFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066766
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-176HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164377.11e-111PREDICTED: MADS-box protein SVP-like
TrEMBLM1DVK31e-110M1DVK3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000950911e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.11e-12AGAMOUS-like 91
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]