PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066865
Common NameLOC102586287
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20643.5 Da    PI: 7.7323
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066865genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.14.1e-171663249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ienk    +tfskRr+g++KKA+EL + Cd+++ ++++s+ gk + +
  PGSC0003DMP400066865 16 KIENKNALLTTFSKRREGLFKKASELVTECDVDIGIMMISPAGKPHSF 63
                          79*****************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.857767IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-24766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-12929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-211663IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERKKTKGRQ KIPMQKIENK NALLTTFSKR REGLFKKASE LVTECDVDIG IMMISPAGKP  60
HSFFHPTVDA IVSHFQNPDM QLSQGIRLDT TTARNKVNQL KNRLEELDAI EDAAIARTTF  120
YDQMAEMRQK GWWESIEQLN ADEQIIFEAW LRDTSSKMFH HLNQLENGAS SSLGRESFGV  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066865
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350424.11e-134PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DVS11e-132M1DVS1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000951901e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-23AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]