PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066946
Common NameLOC107061238
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 260aa    MW: 29505.5 Da    PI: 6.5079
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066946genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.66.2e-24167225259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+++WrKYG K   +s+f +sYYrC  a +Cp+++++++s++dp+ v++tY+g+Hnh+
  PGSC0003DMP400066946 167 ADQWRWRKYGMKRTGDSTFLKSYYRCNEAnDCPARRHIQKSSTDPNKVIVTYRGQHNHP 225
                           59*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.812161227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-23162227IPR003657WRKY domain
SuperFamilySSF1182901.7E-20165227IPR003657WRKY domain
SMARTSM007745.8E-23166226IPR003657WRKY domain
PfamPF031061.0E-19168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAENENDWDL WAVVRSCGRT NNSVHDDINV NNTSVLVDHS VHEDPTHANS VNNTQNTTLL  60
QEETDCVGDF TDSFVTENKH YFGLDEVISL SKNLNTNSRI QPHNQENQTE TIPNTPLVIV  120
EHEEEKKKNK KVRYSMQSPS TEAGKAFCYR GKSTERYELL AEKLSEADQW RWRKYGMKRT  180
GDSTFLKSYY RCNEANDCPA RRHIQKSSTD PNKVIVTYRG QHNHPPPNQH IAMVHGSPKA  240
AAPVEDPSFP SSTSTLLFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-131642271479Disease resistance protein RRS1
5w3x_D9e-131642271479Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066946
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165593.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLM1DVX50.0M1DVX5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000952710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.16e-18WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]