PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066962
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 305aa    MW: 34252.3 Da    PI: 9.6425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066962genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.4e-15347146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          + rW +eEdell ++vk++G ++W++I++ +   R++k+c+ +w +
  PGSC0003DMP400066962  3 KRRWNPEEDELLHKLVKEHGAENWSLISQLIS-SRSGKSCRFWWCN 47
                          579*****************************.***********87 PP
2Myb_DNA-binding55.21.6e-175799347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          ++T eEd  +++a+++lG++ W++Ia+ ++ gRt++ +k++w++ 
  PGSC0003DMP400066962 57 PFTLEEDNTIIRAHAKLGNR-WAKIAHLLP-GRTDNAIKNHWNTT 99
                          89******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.25148IPR017930Myb domain
SMARTSM007172.8E-13251IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-27296IPR009057Homeodomain-like
PfamPF002492.5E-13347IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-20556IPR009057Homeodomain-like
CDDcd001672.10E-13547No hitNo description
PROSITE profilePS5129425.28750104IPR017930Myb domain
SMARTSM007171.9E-1654102IPR001005SANT/Myb domain
CDDcd001679.82E-1457100No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2357103IPR009057Homeodomain-like
PfamPF002497.0E-165799IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MIKRRWNPEE DELLHKLVKE HGAENWSLIS QLISSRSGKS CRFWWCNQFN PQVEHRPFTL  60
EEDNTIIRAH AKLGNRWAKI AHLLPGRTDN AIKNHWNTTL KRKRPSMSGD LTLENPQPPL  120
KKSFSIEAGK NSGSLYRSDL INLGFDRCSQ LSLYPPIAPL GEILPILSVS PVMHEPSTSL  180
SLCSSNMNNF DLSRLPQLSL YPPNASLGEI LTLSSVEPGI PDPSTHLSLS LPGFISTKDL  240
NLVNRIEQIG QLAPISVCKP TPSNFMAQIS IAQSGNVGHK YRERVVESRI FYSLRDMIRK  300
EVKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-3311032104MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-3311032104C-Myb DNA-Binding Domain
1msf_C5e-3311032104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066962
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159282.11e-111PREDICTED: transcriptional activator Myb-like
SwissprotO231603e-46MYB73_ARATH; Transcription factor MYB73
TrEMBLM1DVY70.0M1DVY7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000952870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1853534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-48myb domain protein 73
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]